PROGNOSTIC VALUE OF DEMOGRAPHICS, HISTOPATHOLOGY, AND MISMATCH REPAIR STATUS IN COLORECTAL CANCER: A TIME-TO-EVENT MACHINE LEARNING APPROACH
Nội dung chính của bài viết
Tóm tắt
Background: Colorectal cancer prognosis depends on multiple factors including demographics, histopathology, and mismatch repair (MMR) status. Traditional Cox regression models have limitations in handling high-dimensional clinical data. Objectives: This study applied time-to-event machine learning algorithms to investigate the prognostic values of demographics, histopathology, and MMR status in predicting overall survival of colorectal cancer patients. Materials and Methods: A total of 165 colorectal cancer patients from Can Tho Oncology Hospital (2019-2021) were recruited. Input features included age, sex, pTNM stage, histological type, tumor grade, lymphovascular invasion (LVI), tumor-infiltrating lymphocytes (TILs), perineural invasion (PNI), and MMR protein status. The dataset was divided into training (70%) and testing sets. Five time-to-event algorithms were trained with 1000 bootstraps and hyperparameter tuning, then validated on the testing set. SurvSHAP package was used for feature importance ranking. Results: Gradient Boost Survival outperformed other models with acceptable discrimination (C-index: 0.812, 95% CI: 0.784-0.840) and calibration (integrated Brier score: 0.057, 95% CI: 0.056-0.058). Age, lymphovascular invasion, and MMR status were identified as the three most important predictive features. Feature importance increased during the first 24 months and then stabilized. Conclusion: Time-to-event ensemble machine learning models effectively predict survival prognosis in colorectal cancer. MMR status, combined with demographic and histopathological features, represents an important predictor of overall survival.
Từ khóa
Colorectal cancer, overall survival, mismatch repair, time-to-event analysis, machine learning
Chi tiết bài viết

Bài báo này được cấp phép theo Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Tài liệu tham khảo
2. Baidoun F, Elshiwy K, Elkeraie Y, Merjaneh Z, Khoudari G, Sarmini MT, et al. Colorectal Cancer Epidemiology: Recent Trends and Impact on Outcomes. Curr Drug Targets. 2021. 22(9), 998-1009. DOI: 10.2174/1389450121999201117115717.
3. Pardamean CI, Sudigyo D, Budiarto A, Mahesworo B, Hidayat AA, Baurley JW, et al. Changing Colorectal Cancer Trends in Asians: Epidemiology and Risk Factors. Oncol Rev. 2023. 1710576. DOI: 10.3389/or.2023.10576.
4. Hou JT, Zhao LN, Zhang DJ, Lv DY, He WL, Chen B, et al. Prognostic Value of Mismatch Repair Genes for Patients With Colorectal Cancer: Meta-Analysis. Technol Cancer Res Treat. 2018. 171533033818808507. DOI: 10.1177/1533033818808507.
5. Taieb J, Svrcek M, Cohen R, Basile D, Tougeron D, Phelip JM. Deficient mismatch repair/microsatellite unstable colorectal cancer: Diagnosis, prognosis and treatment. Eur J Cancer. 2022. 175136-57. DOI: 10.1016/j.ejca.2022.07.020.
6. Kim JK, Chen CT, Keshinro A, Khan A, Firat C, Vanderbilt C, et al. Intratumoral T-cell repertoires in DNA mismatch repair-proficient and -deficient colon tumors containing high or low numbers of tumor-infiltrating lymphocytes. Oncoimmunology. 2022. 11(1), 2054757, DOI: 10.1080/2162402X.2022.2054757.
7. Sherman SK, Schuitevoerder D, Chan CHF, Turaga KK. Metastatic Colorectal Cancers with Mismatch Repair Deficiency Result in Worse Survival Regardless of Peritoneal Metastases. Ann Surg Oncol. 2020. 27(13), 5074-83. DOI: 10.1245/s10434-020-08733-x.
8. Jin Z, Sinicrope FA. Mismatch Repair-Deficient Colorectal Cancer: Building on Checkpoint Blockade. J Clin Oncol. 2022. 40(24), 2735-50. DOI: 10.1200/JCO.21.02691.
9. Popat S, Hubner R, Houlston RS. Systematic review of microsatellite instability and colorectal cancer prognosis. J Clin Oncol. 2005. 23(3), 609-18. DOI: 10.1200/JCO.2005.01.086.
10. van der Heide DM, Turaga KK, Chan CHF, Sherman SK. Mismatch Repair Status Correlates with Survival in Young Adults with Metastatic Colorectal Cancer. J Surg Res. 2021. 266104-12. DOI: 10.1016/j.jss.2021.03.040.
11. Gong Q, Zhang HH, Sun SB, Ge WM, Li Y, Zhu YC, et al. Mismatch repair-deficient status associates with favorable prognosis of Eastern Chinese population with sporadic colorectal cancer. Oncol Lett. 2018. 15(5), 7007-13. DOI: 10.3892/ol.2018.8192.
12. Moncada-Torres A, van Maaren MC, Hendriks MP, Siesling S, Geleijnse G. Explainable machine learning can outperform Cox regression predictions and provide insights in breast cancer survival. Sci Rep. 2021. 11(1), 6968. DOI: 10.1038/s41598-021-86327-7.
13. Pölsterl S. scikit-survival: A Library for Time-to-Event Analysis Built on Top of scikit-learn. Journal of Machine Learning Research. 2020. 21(212), 1-6.
14. Fang L, Yang Z, Zhang M, Meng M, Feng J, Chen C. Clinical characteristics and survival analysis of colorectal cancer in China: a retrospective cohort study with 13,328 patients from southern China. Gastroenterol Rep (Oxf). 2021. 9(6), 571-82. DOI: 10.1093/gastro/goab048.
15. Zhong JW, Yang SX, Chen RP, Zhou YH, Ye MS, Miao L, et al. Prognostic Value of Lymphovascular Invasion in Patients with Stage III Colorectal Cancer: A Retrospective Study. Med Sci Monit. 2019. 256043-50. DOI: 10.12659/MSM.918133.